Software Downloads:
- Qnifft: Software for macromolecular electrostatics.
Supported in part by NSF grant MCB02-35440
- Bqequil_pdb: Software for partial charge assignment.
Supported in part by NSF grant MCB02-35440 Yang Q, Sharp
KA. Atomic charge parameters for the finite difference
Poisson-Boltzmann method using electronegativity neutralization.
J Chem Theory Comp 2006;2:1152 - 1167
- Travel Depth: Software for determining the depth of every
part of a molecular surface. Supported in part by NSF
grant MCB02-35440 Coleman, R.
G.; Sharp, K. A. J. Mol. Biol 2006.
- Travel Distance Code 2.0: Contains Travel Depth, Travel Out
and CHUNNEL algorithms . Supported in part by NSF
grant MCB02-35440, NIH grant GM48130, Structural Biology Training
Grant GM008275 and Computational Genomics Training Grant T32HG000046
Coleman, R.G.; Sharp, K.A. Biophys J 2009.
- Travel Distance Code 3.0: Contains Travel Depth, CHUNNEL, CLIPPERS,
Burial Depth. Supported in part by NSF grant MCB02-35440,
NIH grant GM48130, Structural Biology Training Grant GM008275 and
Computational Genomics Training Grant T32HG000046 Coleman, R.G.; Sharp,
K.A. Proteins: Structure, Function and Bioinformatics 2009 & Coleman &
Sharp, J Chem Inf Model 2010.
- Surfmap: Software for mapping protein surfaces to a
sphere. Supported in part by NSF grant MCB02-35440
Rahi SJ, Sharp KA. Mapping complication surfaces to a sphere.
International Journal of Computational Geometry and Applications
2006
- Surfcv: Software for calculating solvent accessible area of
molecules
- Electrostatics presentation
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