• Qnifft: Software for macromolecular electrostatics.  Supported in part by NSF grant  MCB02-35440
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• Bqequil_pdb: Software for partial charge assignment.  Supported in part by NSF grant  MCB02-35440 Yang Q, Sharp KA. Atomic charge parameters for the finite difference Poisson-Boltzmann method using electronegativity neutralization. J Chem Theory Comp 2006;2:1152 - 1167
  • Publication Download
• Travel Depth: Software for determining the depth of every part of a molecular surface.  Supported in part by NSF grant  MCB02-35440 Coleman, R. G, Sharp K. A. Coleman, R. G.; Sharp, K. A. J. Mol. Biol 2006, In Press.
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• Surfmap: Software for mapping protein surfaces to a sphere.  Supported in part by NSF grant  MCB02-35440 Rahi SJ, Sharp KA. Mapping complication surfaces to a sphere. International Journal of Computational Geometry and Applications 2006
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• Surfcv: Software for calculating solvent accessible area of molecules
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• Electrostatics presentation
  • powerpoint (Windows)

Servers:

• Bqequil_pdb: Software to assign partial charges to protein/cofactors etc.   Supported in part by NSF grant  MCB02-35440
  • Start Server
• Software to produce geometrically and sterically correct conformational variants
  of a protein using the elastic network (Tirion model)   Supported in part by NSF grant  MCB02-35440
  • Start Server

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